Transcript: lnc-YES1-8:5

Basic information

LNCipedia transcript ID: lnc-YES1-8:5 
LNCipedia gene ID: lnc-YES1-8
Ensembl Gene ID: ENSG00000265179
Ensembl Transcript ID: ENST00000580612
Location (hg38): chr18:903985-905040
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 439 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580612.1; RP11-672L10.2-003; OTTHUMT00000441684.1; NONHSAT056872
Alternative gene names: ENSG00000265179.1; RP11-672L10.2; OTTHUMG00000178281.2; ENSG00000265179.2; ENSG00000265179.6; AP000894.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.4105 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YES1-8:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YES1-1:3
4.0 lnc-YES1-1:3
4.1 lnc-YES1-1:3
5.0 lnc-YES1-1:3
5.1 lnc-SMAD2-379:5
5.2 lnc-YES1-8:5