Transcript: lnc-XRN1-1:1

Basic information

LNCipedia transcript ID: lnc-XRN1-1:1 
LNCipedia gene ID: lnc-XRN1-1
Ensembl Gene ID: ENSG00000244327
Ensembl Transcript ID: ENST00000460977
Location (hg38): chr3:142465315-142472337
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 765 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000460977.1; RP11-383G6.3-001; OTTHUMT00000354098.1; NONHSAT092473
Alternative gene names: ENSG00000244327.1; RP11-383G6.3; OTTHUMG00000159252.1; AC109992.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.7684 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XRN1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XRN1-1:1
4.0 lnc-XRN1-1:1
4.1 lnc-XRN1-1:1
5.0 lnc-XRN1-1:1
5.1 lnc-GK5-1:8
5.2 lnc-XRN1-1:1