Transcript: lnc-XAGE1B-5:1

Basic information

LNCipedia transcript ID: lnc-XAGE1B-5:1 
LNCipedia gene ID: lnc-XAGE1B-5
Location (hg38): chrX:52381646-52385490
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3845 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc004dqd_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.9964 non-coding 
CPAT coding probability 6.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XAGE1B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XAGE1A-5:1
4.0 lnc-XAGE1A-5:1
4.1 lnc-XAGE1A-5:1
5.0 lnc-XAGE1A-5:1
5.1 lnc-IQSEC2-30:1
5.2 lnc-XAGE1B-5:1