Transcript: lnc-WNT8A-1:1

Basic information

LNCipedia transcript ID: lnc-WNT8A-1:1 
LNCipedia gene ID: lnc-WNT8A-1
Ensembl Gene ID: ENSG00000250260
Ensembl Transcript ID: ENST00000506911
Location (hg38): chr5:138039199-138039979
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 646 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506911; ENST00000506911.1; RP11-325L7.2-001; OTTHUMT00000372159.1; NONHSAT104000
Alternative gene names: ENSG00000250260; RP11-325L7.2; ENSG00000250260.1; OTTHUMG00000163223.1; AC113382.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.2523 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WNT8A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WNT8A-1:1
3.1 lnc-WNT8A-1:1
4.0 lnc-WNT8A-1:1
4.1 lnc-WNT8A-1:1
5.0 lnc-WNT8A-1:1
5.1 lnc-EIF4EBP3-55:1
5.2 lnc-WNT8A-1:1