Transcript: lnc-VWDE-1:1

Basic information

LNCipedia transcript ID: lnc-VWDE-1:1 
LNCipedia gene ID: lnc-VWDE-1
Ensembl Gene ID: ENSG00000225606
Ensembl Transcript ID: ENST00000433040
Location (hg38): chr7:12570125-12571392
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 911 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433040.1; AC005281.2-001; OTTHUMT00000326038.1; NONHSAT119235
Alternative gene names: ENSG00000225606.1; AC005281.2; OTTHUMG00000152384.1; AC005281.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.7823 non-coding 
CPAT coding probability 4.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VWDE-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VWDE-1:1
4.0 lnc-VWDE-1:1
4.1 lnc-VWDE-1:1
5.0 lnc-VWDE-1:1
5.1 lnc-THSD7A-14:1
5.2 lnc-VWDE-1:1