Transcript: lnc-VPS8-2:5

Basic information

LNCipedia transcript ID: lnc-VPS8-2:5 
LNCipedia gene ID: lnc-VPS8-2
Location (hg38): chr3:184715855-184728887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00006334
Alternative gene names: XLOC_002952; linc-VPS8-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.9323 non-coding 
CPAT coding probability 12.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS8-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2B5-2:5
3.1 lnc-EIF2B5-2:5
4.0 lnc-EIF2B5-2:5
4.1 lnc-EIF2B5-2:5
5.0 lnc-EIF2B5-2:5
5.1 lnc-FAM131A-15:5
5.2 lnc-VPS8-2:5