Transcript: lnc-VPS8-2:4

Basic information

LNCipedia transcript ID: lnc-VPS8-2:4 
LNCipedia gene ID: lnc-VPS8-2
Location (hg38): chr3:184715811-184739633
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1649 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006333; NONHSAT093735
Alternative gene names: XLOC_002952; linc-VPS8-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.9995 non-coding 
CPAT coding probability 8.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS8-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2B5-2:4
3.1 lnc-EIF2B5-2:4
4.0 lnc-EIF2B5-2:4
4.1 lnc-EIF2B5-2:4
5.0 lnc-EIF2B5-2:4
5.1 lnc-FAM131A-15:4
5.2 lnc-VPS8-2:4