Transcript: lnc-VPS54-1:2

Basic information

LNCipedia transcript ID: lnc-VPS54-1:2 
LNCipedia gene ID: lnc-VPS54-1
Location (hg38): chr2:63800262-63801590
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 429 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00005162
Alternative gene names: XLOC_002120; linc-C2orf86-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4479 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS54-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VPS54-1:2
3.1 lnc-VPS54-1:2
4.0 lnc-VPS54-1:2
4.1 lnc-VPS54-1:2
5.0 lnc-VPS54-1:2
5.1 lnc-GKN2-128:3
5.2 lnc-VPS54-1:2