Transcript: lnc-VPREB1-27:1

Basic information

LNCipedia transcript ID: lnc-VPREB1-27:1 
LNCipedia gene ID: lnc-VPREB1-27
Location (hg38): chr22:22404207-22404721
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT083784
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 100.8883 coding 
CPAT coding probability 41.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VPREB1-27:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LL22NC03-63E9.3.1-8:1
4.0 lnc-LL22NC03-63E9.3.1-8:1
4.1 lnc-LL22NC03-63E9.3.1-8:1
5.0 lnc-LL22NC03-63E9.3.1-8:1
5.1 lnc-LRRC74B-52:1
5.2 lnc-VPREB1-27:1