Transcript: lnc-VLDLR-4:1

Basic information

LNCipedia transcript ID: lnc-VLDLR-4:1 
LNCipedia gene ID: lnc-VLDLR-4
Location (hg38): chr9:2042994-2046019
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3026 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT129986
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.4893 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VLDLR-4:1 yes no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VLDLR-4:1
4.0 lnc-VLDLR-4:1
4.1 lnc-VLDLR-4:1
5.0 lnc-VLDLR-4:1
5.1 lnc-RECK-294:1
5.2 lnc-VLDLR-4:1