Transcript: lnc-VLDLR-3:1

Basic information

LNCipedia transcript ID: lnc-VLDLR-3:1 
LNCipedia gene ID: lnc-VLDLR-3
Location (hg38): chr9:2531097-2531635
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 206 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT129998
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.6016 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VLDLR-3:1 no no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VLDLR-3:1
4.0 lnc-VLDLR-3:1
4.1 lnc-VLDLR-3:1
5.0 lnc-VLDLR-3:1
5.1 lnc-RECK-290:1
5.2 lnc-VLDLR-3:1