Transcript: lnc-VIRMA-1:13

Basic information

LNCipedia transcript ID: lnc-VIRMA-1:13 
LNCipedia gene ID: lnc-VIRMA-1
Location (hg38): chr8:94637700-94638408
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015107; NONHSAT127789
Alternative gene names: XLOC_007162; linc-KIAA1429-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.3232 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VIRMA-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1429-1:1
3.1 lnc-KIAA1429-1:2
4.0 lnc-KIAA1429-1:2
4.1 lnc-KIAA1429-1:2
5.0 lnc-KIAA1429-1:2
5.1 lnc-ZNF706-151:13
5.2 lnc-VIRMA-1:13