Transcript: lnc-VCAM1-1:1

Basic information

LNCipedia transcript ID: lnc-VCAM1-1:1 
LNCipedia gene ID: lnc-VCAM1-1
Location (hg38): chr1:100656279-100706144
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2386 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00001058
Alternative gene names: XLOC_000316; linc-VCAM1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.086 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VCAM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VCAM1-1:1
3.1 lnc-VCAM1-1:1
4.0 lnc-VCAM1-1:1
4.1 lnc-VCAM1-1:1
5.0 lnc-VCAM1-1:1
5.1 lnc-SLC30A7-14:2
5.2 lnc-VCAM1-1:1