Transcript: lnc-VASN-2:1

Basic information

LNCipedia transcript ID: lnc-VASN-2:1 
LNCipedia gene ID: lnc-VASN-2
Ensembl Gene ID: ENSG00000277170
Ensembl Transcript ID: ENST00000614983
Location (hg38): chr16:4426902-4427380
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 479 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614983.1
Alternative gene names: ENSG00000277170.1; RP11-295D4.4; AC012676.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.3879 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VASN-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-VASN-2:1
4.1 lnc-VASN-2:1
5.0 lnc-VASN-2:1
5.1 lnc-SMIM22-14:1
5.2 lnc-VASN-2:1