Transcript: lnc-USP8-3:1

Basic information

LNCipedia transcript ID: lnc-USP8-3:1 
LNCipedia gene ID: lnc-USP8-3
Location (hg38): chr15:50579877-50582697
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1160 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_1155_chr15:50872073-50874894_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6152 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP8-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP8-3:1
4.0 lnc-USP8-3:1
4.1 lnc-USP8-3:1
5.0 lnc-USP8-3:1
5.1 lnc-CCNDBP1-93:1
5.2 lnc-USP8-3:1

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