Transcript: lnc-USP6NL-9:1

Basic information

LNCipedia transcript ID: lnc-USP6NL-9:1 
LNCipedia gene ID: lnc-USP6NL-9
Ensembl Gene ID: ENSG00000234306
Ensembl Transcript ID: ENST00000455871
Location (hg38): chr10:10365180-10366487
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017925; ENST00000455871; ENST00000455871.1; RP11-271F18.1-001; OTTHUMT00000046740.1; NONHSAT011357
Alternative gene names: XLOC_008728; linc-KIN-8; ENSG00000234306; RP11-271F18.1; ENSG00000234306.1; OTTHUMG00000017657.1; AL583859.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.5296 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf31-5:1
3.1 lnc-C10orf31-9:1
4.0 lnc-C10orf31-9:1
4.1 lnc-C10orf31-9:1
5.0 lnc-C10orf31-9:1
5.1 lnc-KLF6-128:1
5.2 lnc-USP6NL-9:1