Transcript: lnc-USP6NL-7:7

Basic information

LNCipedia transcript ID: lnc-USP6NL-7:7 
LNCipedia gene ID: lnc-USP6NL-7
Location (hg38): chr10:10783904-10794977
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1150 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018434; NONHSAT011370
Alternative gene names: XLOC_008730; linc-KIN-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.5663 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-7:7 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf31-3:6
3.1 lnc-C10orf31-7:6
4.0 lnc-C10orf31-7:6
4.1 lnc-C10orf31-7:6
5.0 lnc-C10orf31-7:6
5.1 lnc-KLF6-131:7
5.2 lnc-USP6NL-7:7