Transcript: lnc-USP6NL-7:5

Basic information

LNCipedia transcript ID: lnc-USP6NL-7:5 
LNCipedia gene ID: lnc-USP6NL-7
Location (hg38): chr10:10786644-10794980
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 254 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017929; ENST00000434919; ENST00000434919.1; SFTA1P-002; OTTHUMT00000046744.1; NONHSAT011377
Alternative gene names: XLOC_008730; linc-KIN-6; ENSG00000225383; SFTA1P; ENSG00000225383.1; OTTHUMG00000017660.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -325.4913 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-7:5 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf31-3:5
3.1 lnc-C10orf31-7:5
4.0 lnc-C10orf31-7:5
4.1 lnc-C10orf31-7:5
5.0 lnc-C10orf31-7:5
5.1 lnc-KLF6-131:5
5.2 lnc-USP6NL-7:5