Transcript: lnc-USP6NL-7:16

Basic information

LNCipedia transcript ID: lnc-USP6NL-7:16 
LNCipedia gene ID: lnc-USP6NL-7
Location (hg38): chr10:10784438-10794918
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225383.2|ENST00000434919.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -325.4913 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-7:16 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C10orf31-7:15
5.0 lnc-C10orf31-7:15
5.1 lnc-KLF6-131:16
5.2 lnc-USP6NL-7:16