Transcript: lnc-USP42-1:4

Basic information

LNCipedia transcript ID: lnc-USP42-1:4 
LNCipedia gene ID: lnc-USP42-1
Ensembl Gene ID: ENSG00000231704
Ensembl Transcript ID: ENST00000428901
Location (hg38): chr7:6081671-6093085
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012945; ENST00000428901; ENST00000428901.1; AC004895.4-003; OTTHUMT00000324258.1; NONHSAT118975
Alternative gene names: XLOC_005979; linc-USP42; ENSG00000231704; AC004895.4; ENSG00000231704.1; OTTHUMG00000151887.1; ENSG00000231704.5; AC004895.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.6971 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP42-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP42-1:4
3.1 lnc-USP42-1:4
4.0 lnc-USP42-1:4
4.1 lnc-USP42-1:4
5.0 lnc-USP42-1:4
5.1 lnc-SLC29A4-18:4
5.2 lnc-USP42-1:4