Transcript: lnc-USP35-6:1

Basic information

LNCipedia transcript ID: lnc-USP35-6:1 
LNCipedia gene ID: lnc-USP35-6
Ensembl Gene ID: ENSG00000255345
Ensembl Transcript ID: ENST00000525952
Location (hg38): chr11:79092848-79093835
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 406 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525952; ENST00000525952.1; CTD-2337I7.1-002; OTTHUMT00000391455.1; NONHSAT023303
Alternative gene names: ENSG00000255345; CTD-2337I7.1; ENSG00000255345.1; OTTHUMG00000166784.1; AP002957.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -279.4372 non-coding 
CPAT coding probability 9.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP35-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP35-2:1
3.1 lnc-USP35-6:1
4.0 lnc-USP35-6:1
4.1 lnc-USP35-6:1
5.0 lnc-USP35-6:1
5.1 lnc-DDIAS-38:1
5.2 lnc-USP35-6:1