Transcript: lnc-USP31-2:3

Basic information

LNCipedia transcript ID: lnc-USP31-2:3 
LNCipedia gene ID: lnc-USP31-2
Ensembl Gene ID: ENSG00000260566
Ensembl Transcript ID: ENST00000563129
Location (hg38): chr16:23061406-23064173
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2768 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563129.2
Alternative gene names: ENSG00000260566.2; RP11-20G6.3; AC127459.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.7604 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP31-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COG7-2:2
4.0 lnc-USP31-2:3
4.1 lnc-USP31-2:3
5.0 lnc-USP31-2:3
5.1 lnc-SULT1A2-200:2
5.2 lnc-USP31-2:3