Transcript: lnc-USP25-13:2

Basic information

LNCipedia transcript ID: lnc-USP25-13:2 
LNCipedia gene ID: lnc-USP25-13
Ensembl Gene ID: ENSG00000236471
Ensembl Transcript ID: ENST00000449746
Location (hg38): chr21:15067070-15067837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028794; ENST00000449746; ENST00000449746.1; AF127577.12-001; OTTHUMT00000157936.1; NONHSAT081195
Alternative gene names: XLOC_013865; linc-USP25-1; ENSG00000236471; AF127577.12; ENSG00000236471.1; OTTHUMG00000074332.1; AF127577.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -276.3234 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP25-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AF127577.1-1:1
3.1 lnc-AF127577.1-1:1
4.0 lnc-AF127577.1-1:1
4.1 lnc-AF127577.1-1:1
5.0 lnc-AF127577.1-1:1
5.1 lnc-OLIG1-130:2
5.2 lnc-USP25-13:2