Transcript: lnc-USP12-9:2

Basic information

LNCipedia transcript ID: lnc-USP12-9:2 
HGNC Gene Symbol: lnc-USP12-9    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2340
Ensembl Gene ID: ENSG00000275294
Ensembl Transcript ID: ENST00000620494
Location (hg38): chr13:27203087-27251288
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 573 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620494.1
Alternative gene names: ENSG00000275294.4; RP11-428O18.6; ; LINC02340


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.4718 non-coding 
CPAT coding probability 22.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP12-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-USP12-3:5
4.1 LINC00412:4
5.0 LINC00412:4
5.1 lnc-SLC7A1-26:2
5.2 lnc-USP12-9:2