Transcript: lnc-USH2A-2:2

Basic information

LNCipedia transcript ID: lnc-USH2A-2:2 
LNCipedia gene ID: lnc-USH2A-2
Location (hg38): chr1:215453688-215453823
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 255 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_2309_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.2521 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USH2A-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USH2A-2:2
4.0 lnc-USH2A-2:2
4.1 lnc-USH2A-2:2
5.0 lnc-USH2A-2:2
5.1 lnc-IRF6-73:2
5.2 lnc-USH2A-2:2