Transcript: lnc-URM1-1:3

Basic information

LNCipedia transcript ID: lnc-URM1-1:3 
LNCipedia gene ID: lnc-URM1-1
Ensembl Gene ID: ENSG00000272593
Ensembl Transcript ID: ENST00000609303
Location (hg38): chr9:128391461-128392016
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 556 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609303.1
Alternative gene names: ENSG00000272593.1; RP11-339B21.11; AL359091.2; AL359091.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.2589 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-URM1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-URM1-1:3
4.0 lnc-URM1-1:3
4.1 lnc-URM1-1:3
5.0 lnc-URM1-1:3
5.1 lnc-PTPA-45:1
5.2 lnc-URM1-1:3