Transcript: lnc-UQCRFS1-3:5

Basic information

LNCipedia transcript ID: lnc-UQCRFS1-3:5 
LNCipedia gene ID: lnc-UQCRFS1-3
Location (hg38): chr19:28704249-28724340
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 647 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT064058; ENST00000590072.1
Alternative gene names: ENSG00000267243.1; AC005307.3; ENSG00000267243.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 129.9949 coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UQCRFS1-3:5 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UQCRFS1-3:5
4.0 lnc-UQCRFS1-3:5
4.1 lnc-UQCRFS1-3:5
5.0 lnc-UQCRFS1-3:5
5.1 lnc-SCGB2B2-120:15
5.2 lnc-UQCRFS1-3:5