Transcript: lnc-UCP2-1:2

Basic information

LNCipedia transcript ID: lnc-UCP2-1:2 
LNCipedia gene ID: lnc-UCP2-1
Ensembl Gene ID: ENSG00000255847
Ensembl Transcript ID: ENST00000540886
Location (hg38): chr11:73964063-73965032
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 371 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540886.1; RP11-167N4.2-001; OTTHUMT00000398107.1
Alternative gene names: ENSG00000255847.1; RP11-167N4.2; OTTHUMG00000168094.1; ENSG00000255847.5; AP003717.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.9517 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCP2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UCP2-1:2
4.0 lnc-UCP2-1:2
4.1 lnc-UCP2-1:2
5.0 lnc-UCP2-1:2
5.1 lnc-UCP3-9:2
5.2 lnc-UCP2-1:2