Transcript: lnc-UCHL5-3:1

Basic information

LNCipedia transcript ID: lnc-UCHL5-3:1 
LNCipedia gene ID: lnc-UCHL5-3
Ensembl Gene ID: ENSG00000223344
Ensembl Transcript ID: ENST00000428569
Location (hg38): chr1:191858763-191890229
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000705; ENST00000428569; ENST00000428569.1; RP11-541F9.1-002; OTTHUMT00000098603.1; NONHSAT008522
Alternative gene names: XLOC_001132; linc-FAM5C-3; ENSG00000223344; RP11-541F9.1; ENSG00000223344.1; OTTHUMG00000041126.1; AL359081.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.4283 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCHL5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UCHL5-3:1
3.1 lnc-UCHL5-3:1
4.0 lnc-UCHL5-3:1
4.1 lnc-UCHL5-3:1
5.0 lnc-UCHL5-3:1
5.1 lnc-MYOG-110:1
5.2 lnc-UCHL5-3:1