Transcript: lnc-UBB-1:2

Basic information

LNCipedia transcript ID: lnc-UBB-1:2 
LNCipedia gene ID: lnc-UBB-1
Location (hg38): chr17:16326485-16347674
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 699 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000431149.1; AC005971.3-001; OTTHUMT00000131889.1; NONHSAT145902
Alternative gene names: ENSG00000225436.1; AC005971.3; OTTHUMG00000059347.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.2376 non-coding 
CPAT coding probability 9.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBB-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGL-1:1
4.0 lnc-PIGL-1:1
4.1 lnc-PIGL-1:1
5.0 lnc-PIGL-1:1
5.1 lnc-GLP2R-74:1
5.2 lnc-UBB-1:2