Transcript: lnc-UBASH3B-2:5

Basic information

LNCipedia transcript ID: lnc-UBASH3B-2:5 
LNCipedia gene ID: lnc-UBASH3B-2
Location (hg38): chr11:122180807-122182980
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1201 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_5516_transcript_7
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.6756 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBASH3B-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBASH3B-2:5
4.0 lnc-UBASH3B-2:5
4.1 lnc-UBASH3B-2:5
5.0 lnc-UBASH3B-2:5
5.1 lnc-HINFP-38:3
5.2 lnc-UBASH3B-2:5