Transcript: lnc-UBAP2-6:6

Basic information

LNCipedia transcript ID: lnc-UBAP2-6:6 
HGNC Gene Symbol: lnc-UBAP2-6    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1251
Ensembl Gene ID: ENSG00000233776
Ensembl Transcript ID: ENST00000444956
Location (hg38): chr9:33732975-33738416
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 486 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444956.1; RP11-384P7.6-001; OTTHUMT00000001050.1; NONHSAT130800; NR_109755; ENST00000444956.5
Alternative gene names: ENSG00000233776.1; RP11-384P7.6; OTTHUMG00000000413.1; ENSG00000233776.5; LINC01251;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.4488 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBAP2-6:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBAP2-3:2
4.0 LINC01251:6
4.1 LINC01251:6
5.0 LINC01251:6
5.1 lnc-CD72-53:6
5.2 lnc-UBAP2-6:6