Transcript: lnc-UAP1L1-5:2

Basic information

LNCipedia transcript ID: lnc-UAP1L1-5:2 
LNCipedia gene ID: lnc-UAP1L1-5
Location (hg38): chr9:137052774-137053374
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 467 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000439076.1; RP11-229P13.15-001; OTTHUMT00000055214.1; NONHSAT135661
Alternative gene names: ENSG00000236394.1; RP11-229P13.15; OTTHUMG00000020960.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.0418 non-coding 
CPAT coding probability 15.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UAP1L1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf139-1:1
4.0 lnc-C9orf139-1:1
4.1 lnc-C9orf139-1:1
5.0 lnc-C9orf139-1:1
5.1 lnc-GPSM1-40:2
5.2 lnc-UAP1L1-5:2