Transcript: lnc-TVP23B-3:1

Basic information

LNCipedia transcript ID: lnc-TVP23B-3:1 
LNCipedia gene ID: lnc-TVP23B-3
Ensembl Gene ID: ENSG00000265478
Ensembl Transcript ID: ENST00000584957
Location (hg38): chr17:18809956-18810940
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 985 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584957.2
Alternative gene names: ENSG00000265478.2; CTD-2145A24.5; AC107982.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.3851 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TVP23B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FAM18B1-3:1
4.1 lnc-FAM18B1-3:1
5.0 lnc-FAM18B1-3:1
5.1 lnc-GLP2R-138:1
5.2 lnc-TVP23B-3:1