Transcript: lnc-TUBGCP3-4:2

Basic information

LNCipedia transcript ID: lnc-TUBGCP3-4:2 
LNCipedia gene ID: lnc-TUBGCP3-4
Location (hg38): chr13:112256728-112273000
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1935 bp
Exons: 9
Sources: Biogazelle lncRNA chip; Broad Institute
Alternative transcript names: ENST00000503344; TCONS_00021698
Alternative gene names: ENSG00000251004; XLOC_010732; linc-ANKRD10-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.6585 non-coding 
CPAT coding probability 45.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TUBGCP3-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBGCP3-3:2
3.1 lnc-TUBGCP3-4:2
4.0 lnc-TUBGCP3-4:2
4.1 lnc-TUBGCP3-4:2
5.0 lnc-TUBGCP3-4:2
5.1 lnc-DCUN1D2-17:2
5.2 lnc-TUBGCP3-4:2