Transcript: lnc-TUBE1-6:1

Basic information

LNCipedia transcript ID: lnc-TUBE1-6:1 
LNCipedia gene ID: lnc-TUBE1-6
Ensembl Gene ID: ENSG00000270661
Ensembl Transcript ID: ENST00000603682
Location (hg38): chr6:112217640-112219570
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1931 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT114508; ENST00000603682.1
Alternative gene names: ENSG00000270661.1; RP1-142L7.9; Z99289.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.1967 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBE1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TUBE1-6:1
4.0 lnc-TUBE1-6:1
4.1 lnc-TUBE1-6:1
5.0 lnc-TUBE1-6:1
5.1 lnc-HDAC2-20:1
5.2 lnc-TUBE1-6:1