Transcript: lnc-TUBA3C-3:1

Basic information

LNCipedia transcript ID: lnc-TUBA3C-3:1 
LNCipedia gene ID: lnc-TUBA3C-3
Location (hg38): chr13:18718767-18719729
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00021607; ENST00000444605; ENST00000444605.1; RP11-38M15.3-001; OTTHUMT00000043984.1; NONHSAT032194
Alternative gene names: XLOC_010520; linc-RASA3-7; ENSG00000236169; RP11-38M15.3; ENSG00000236169.1; OTTHUMG00000016461.1; LINC00418


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.422 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBA3C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBA3C-2:1
3.1 lnc-TUBA3C-3:1
4.0 lnc-TUBA3C-3:1
4.1 lnc-TUBA3C-3:1
5.0 lnc-TUBA3C-3:1
5.1 lnc-ZDHHC20-68:1
5.2 lnc-TUBA3C-3:1