Transcript: lnc-TTC39A-4:1

Basic information

LNCipedia transcript ID: lnc-TTC39A-4:1 
LNCipedia gene ID: lnc-TTC39A-4
Location (hg38): chr1:51236686-51236893
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 208 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000058318.1|FTMT20200001842.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -112.7488 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC39A-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TTC39A-4:1
5.0 lnc-TTC39A-4:1
5.1 lnc-TXNDC12-12:1
5.2 lnc-TTC39A-4:1