Transcript: lnc-TTC23-3:1

Basic information

LNCipedia transcript ID: lnc-TTC23-3:1 
LNCipedia gene ID: lnc-TTC23-3
Ensembl Gene ID: ENSG00000259341
Ensembl Transcript ID: ENST00000560103
Location (hg38): chr15:99427009-99431028
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560103.1; RP11-20G13.1-001; OTTHUMT00000416052.1; NONHSAT050872
Alternative gene names: ENSG00000259341.1; RP11-20G13.1; OTTHUMG00000171950.1; AC015660.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.1338 non-coding 
CPAT coding probability 7.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC23-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC23-3:1
4.0 lnc-TTC23-3:1
4.1 lnc-TTC23-3:1
5.0 lnc-TTC23-3:1
5.1 lnc-CIB1-92:7
5.2 lnc-TTC23-3:1