Transcript: lnc-TTC14-3:1

Basic information

LNCipedia transcript ID: lnc-TTC14-3:1 
LNCipedia gene ID: lnc-TTC14-3
Location (hg38): chr3:180868159-180871470
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1540 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00006322
Alternative gene names: XLOC_002938; linc-FXR1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 67.672 coding 
CPAT coding probability 11.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TTC14-3:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC14-2:1
3.1 lnc-TTC14-3:1
4.0 lnc-TTC14-3:1
4.1 lnc-TTC14-3:1
5.0 lnc-TTC14-3:1
5.1 lnc-SOX2-15:1
5.2 lnc-TTC14-3:1