Transcript: lnc-TSSK6-4:2

Basic information

LNCipedia transcript ID: lnc-TSSK6-4:2 
LNCipedia gene ID: lnc-TSSK6-4
Location (hg38): chr19:19354735-19358079
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2929 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000501391
Alternative gene names: ENSG00000245833


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.8229 non-coding 
CPAT coding probability 18.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSSK6-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSSK6-1:2
3.1 lnc-TSSK6-1:2
4.0 lnc-TSSK6-1:2
4.1 lnc-TSSK6-1:2
5.0 lnc-TSSK6-1:2
5.1 lnc-PALM3-150:2
5.2 lnc-TSSK6-4:2