Transcript: lnc-TSPY2-6:1

Basic information

LNCipedia transcript ID: lnc-TSPY2-6:1 
LNCipedia gene ID: lnc-TSPY2-6
Ensembl Gene ID: ENSG00000273906
Ensembl Transcript ID: ENST00000620503
Location (hg38): chrY:6918682-6920791
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2110 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139351; ENST00000620503.1
Alternative gene names: ENSG00000273906.1; RP11-115H13.1; AC011297.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.6511 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPY2-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPY2-6:1
4.0 lnc-TSPY2-6:1
4.1 lnc-TSPY2-6:1
5.0 lnc-TSPY2-6:1
5.1 lnc-TGIF2LY-24:1
5.2 lnc-TSPY2-6:1