Transcript: lnc-TSC22D1-2:1

Basic information

LNCipedia transcript ID: lnc-TSC22D1-2:1 
LNCipedia gene ID: lnc-TSC22D1-2
Location (hg38): chr13:44371888-44373533
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 838 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021985; NONHSAT033502
Alternative gene names: XLOC_010587; linc-CCDC122-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.1475 non-coding 
CPAT coding probability 22.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSC22D1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSC22D1-2:1
3.1 lnc-TSC22D1-2:1
4.0 lnc-TSC22D1-2:1
4.1 lnc-TSC22D1-2:1
5.0 lnc-TSC22D1-2:1
5.1 lnc-CCDC169-98:3
5.2 lnc-TSC22D1-2:1