Transcript: lnc-TRUB1-1:1

Basic information

LNCipedia transcript ID: lnc-TRUB1-1:1 
LNCipedia gene ID: lnc-TRUB1-1
Ensembl Gene ID: ENSG00000236799
Ensembl Transcript ID: ENST00000433085
RefSeq ID: NR_120677
Location (hg38): chr10:114994657-114996593
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017871; ENST00000433085; ENST00000433085.1; RP11-383C6.2-001; OTTHUMT00000050506.1; NONHSAT016472; NR_120677; NR_120677.1
Alternative gene names: XLOC_008629; linc-ATRNL1; ENSG00000236799; RP11-383C6.2; ENSG00000236799.1; OTTHUMG00000019095.1; AL355340.1; LOC102724589


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.5306 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRUB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRUB1-1:1
3.1 lnc-TRUB1-1:1
4.0 lnc-TRUB1-1:1
4.1 lnc-TRUB1-1:1
5.0 lnc-TRUB1-1:1
5.1 lnc-VTI1A-34:2
5.2 lnc-TRUB1-1:1