Transcript: lnc-TRMT112-3:1

Basic information

LNCipedia transcript ID: lnc-TRMT112-3:1 
LNCipedia gene ID: lnc-TRMT112-3
Location (hg38): chr11:64410076-64420215
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 419 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00019172; ENST00000452309.1; AP003774.7-001; OTTHUMT00000316962.1; NONHSAT021993
Alternative gene names: XLOC_009464; linc-TRMT112-3; ENSG00000224456.1; AP003774.7; OTTHUMG00000150231.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0194 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRMT112-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRMT112-2:1
3.1 lnc-TRMT112-3:1
4.0 lnc-TRMT112-3:1
4.1 lnc-TRMT112-3:1
5.0 lnc-TRMT112-3:1
5.1 lnc-LTBP3-76:1
5.2 lnc-TRMT112-3:1