Transcript: lnc-TRIM36-4:2

Basic information

LNCipedia transcript ID: lnc-TRIM36-4:2 
LNCipedia gene ID: lnc-TRIM36-4
Ensembl Gene ID: ENSG00000246316
Ensembl Transcript ID: ENST00000506265
Location (hg38): chr5:114662961-114668406
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506265.1; RP11-492A10.1-002; OTTHUMT00000370915.1; NONHSAT103284
Alternative gene names: ENSG00000246316.3; RP11-492A10.1; OTTHUMG00000162871.1; ENSG00000246316.7; AC010230.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.1961 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM36-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM36-4:2
4.0 lnc-TRIM36-4:2
4.1 lnc-TRIM36-4:2
5.0 lnc-TRIM36-4:2
5.1 lnc-LOX-119:4
5.2 lnc-TRIM36-4:2