Transcript: lnc-TRIM29-1:1

Basic information

LNCipedia transcript ID: lnc-TRIM29-1:1 
LNCipedia gene ID: lnc-TRIM29-1
Ensembl Gene ID: ENSG00000259541
Ensembl Transcript ID: ENST00000558822
RefSeq ID: NR_038829
Location (hg38): chr11:120249759-120265932
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2128 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000558822.1; RP11-778O17.4-003; OTTHUMT00000416108.1; NONHSAT024721; NR_038829; ENST00000558822.5; NR_038829.1
Alternative gene names: ENSG00000259541.1; RP11-778O17.4; OTTHUMG00000171955.1; ENSG00000259541.5; AP001150.1; LOC649133


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.4483 non-coding 
CPAT coding probability 16.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM29-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM29-1:1
4.0 lnc-TRIM29-1:1
4.1 lnc-TRIM29-1:1
5.0 lnc-TRIM29-1:1
5.1 lnc-SLC37A4-43:2
5.2 lnc-TRIM29-1:1