Transcript: lnc-TRIM27-10:3

Basic information

LNCipedia transcript ID: lnc-TRIM27-10:3 
LNCipedia gene ID: lnc-TRIM27-10
Location (hg38): chr6:28837869-28839023
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 726 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225173.1|ENST00000457253.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -85.3759 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM27-10:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRIM27-10:3
5.0 lnc-TRIM27-10:3
5.1 lnc-SFTA2-58:2
5.2 lnc-TRIM27-10:3