Transcript: lnc-TRIM26-2:47

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:47 
LNCipedia gene ID: lnc-TRIM26-2
Location (hg38): chr6:30281306-30326386
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 14965 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231074.4|FTMT22100000107.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 29.8995 non-coding 
CPAT coding probability 10.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM26-2:47 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRIM26-2:47
5.0 lnc-TRIM26-2:47
5.1 lnc-SFTA2-26:29
5.2 lnc-TRIM26-2:47