Transcript: lnc-TREML1-1:2

Basic information

LNCipedia transcript ID: lnc-TREML1-1:2 
LNCipedia gene ID: lnc-TREML1-1
Location (hg38): chr6:41140063-41140832
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000432833; ENST00000432833.1; RP1-238O23.4-003; OTTHUMT00000040503.1
Alternative gene names: ENSG00000228342; RP1-238O23.4; ENSG00000228342.1; OTTHUMG00000014672.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -290.0008 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TREML1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TREML1-1:1
3.1 lnc-TREML1-1:2
4.0 lnc-TREML1-1:2
4.1 lnc-TREML1-1:2
5.0 lnc-TREML1-1:2
5.1 lnc-TREML2-4:1
5.2 lnc-TREML1-1:2